#!/bin/bash

files='RGc19_S11 RGc18_S10 RGc16_S8 RGc20_S12 RGc14_S6 RGc15_S7 RGc17_S9'
for f in $files; do
    echo $f;
    alevin-fry collate -i ../outputs/alevin_fry_gpl/${f} -r ../outputs/salmon_alevin/${f}/ -t 8
    echo '';
done
